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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300032049 Open in IMG/M |
| Scaffold ID | Ga0308416_1002841 Open in IMG/M |
| Source Dataset Name | Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090730_OS60 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 5395 |
| Total Scaffold Genes | 8 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (50.00%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (40.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wyoming | |||||||
| Coordinates | Lat. (o) | 44.5341 | Long. (o) | -110.798 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F007033 | Metagenome / Metatranscriptome | 359 | Y |
| F023603 | Metagenome / Metatranscriptome | 209 | N |
| F024322 | Metagenome / Metatranscriptome | 206 | N |
| F038584 | Metagenome / Metatranscriptome | 165 | Y |
| F068874 | Metagenome / Metatranscriptome | 124 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0308416_10028411 | F023603 | N/A | LGKYTISLGMLYTTEDFTGQYRLDSNAITQADYQRAIDEHERVLLEYFFELDSVEKIYAALPAAAPAVGVRNVLRDLALPFIFGRIKMGVGSSVAGEPNTQGYTRIGYTPYLAYRGSETLRRLMRFAPFVVQAELAAPTATIPYPSPTPQAPDFVAIGDSVRAYTTSGEVQTSVVSVTATDITLATPLPSGQVRVIVENLRIRISRAYLTF |
| Ga0308416_10028413 | F038584 | N/A | MTEEIKQIQKAGEELLATLHATAATEEETKTLDAISKAAAHIRQQLRERAPSAGTRIKVSDLRAGRKLMQRYVQKTTVGANTPREYIGEAFYVTRQLVIEFVQDYLRTETLDVLAEITQVRLNPFTGAPAIVGEGGEKPTMATTPQRVTSNYQKIAFGDVITDEVLLAYPDIVEFLIWHGAYRLEVFLHNALITLLSSIASAATLPTGIISPQVADLLIYMRAFHDQQSAISRRGEWIANAAIVPFPYYWSLVFGALKSTTGEYLQLDRQLQGLTLIPAGAAQTAPTVVFNENELEVFFLGDITVNFGRVLDAASDTNVRRLSMDLFYAPLSHTGRPVIVANTQNAINSMAQ |
| Ga0308416_10028416 | F024322 | N/A | MSLLRKLRNARQRRYLRLVDPVLQQFEFCPVWANYLTPPSPVQVDTSVGTLTIQTGLVRSFVREYDVSTYAFPFSVEERVAFHPPPIFVAHYNEFSQIAVRQKDAFLAVIPDARMGKSEWGEVEHEAFFFAPALDTEEFEVQLDRIAGVRESLMELWPKMVSITEIVPKFSRRAEWGTGEKLVKGEWIAIRLTINLKDYELNAV |
| Ga0308416_10028417 | F007033 | GAG | MQCRCSQPLWALGIPDCHPVLRPIRRVVFETVLNSSSAPADFDLPNSSLYPNARRLMTPVLYNVESERPEAVFEELSGTKFFVRHQPRAFKALVAKPPTEWGINIEQLRCVSRLGVFLIDDAGVVWGRRVSVNEAAPIPIEPGTVQARLLFPSDATITKYEFSFDFAQSLMDFELVPVFADAGLLNYVPRIAARIAVLNIPPLVVLVYALYARGARDFYTPITGLATYLEVRDNANTPITTNFTEMEPGRYQDSSFAGPPSGNPYTIRVGAGAPTGAFDYTTAVAQFRV |
| Ga0308416_10028418 | F068874 | GAG | VFGRLRRVLRFYERVELPDVPAQAQSLSYGGKTIVSYPPSPAWAVREPLWLGRRGLGIYAPSTAKMRRKLGLPDREIVLFQTGQLYASIQVLNMKKYYLVRVQRDKLFYIIRRFPVERWLRVDASAVRAGLRNALLAALLGCAPLKKTKSVQSVEVAVKREEVVAHETLRLTTLLNDTIHLRNERIVIHYDTIRQMLRIEQVRPVVVVRDSVVRQNVVMQALPGVAEERAEKRLSWWKRWGQGVFALMLGLSLIGFIG |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |