NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308416_1003103

Scaffold Ga0308416_1003103


Overview

Basic Information
Taxon OID3300032049 Open in IMG/M
Scaffold IDGa0308416_1003103 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090730_OS60
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5108
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (80.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006418Metagenome / Metatranscriptome373Y
F010840Metagenome / Metatranscriptome298Y
F016404Metagenome / Metatranscriptome247N
F043176Metagenome / Metatranscriptome156Y
F051735Metagenome / Metatranscriptome143N

Sequences

Protein IDFamilyRBSSequence
Ga0308416_10031033F043176AGGAGMQKYKIWEGERTFLPGDDASKFTIIEITGEELGWFEDVIDGKTYYVYQTSEGEVVINIVEQNYGIGEPSRAVIYRFSSLEDAAQSEQRYALEELRLI
Ga0308416_10031035F006418AGGAGVSKRRSSPSRGPQTAREIVVAAGDDYRILFDCVARDYAVEYRGQPVGWRATEYEARRLVEALRCEEARRGE
Ga0308416_10031037F051735AGGAGGMFQDVTIINGPVRKNGVSDYERVRIKARPLGRSYAWDNGSPWNDYTTNGGFILVFECEDGAVYVQEVEWEVDPYPDSTPEPRTYYYYEKYSSLDEARAGWRGWLIEQVLRD
Ga0308416_10031038F010840AGGAGGVNLPFSQPLDKVTFGALAAATVIIFTWALREFAGIDLPAEVQAALAVIIGYVVSYHVPLSEFEAEAIARKYYRNYK
Ga0308416_10031039F016404N/AMTTEELLTDESRAAVLRALLMIALDESVPASARVAAARLFLSQFDEQPNADQSVLVIVDDAAFVKTV
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