NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308416_1009404

Scaffold Ga0308416_1009404


Overview

Basic Information
Taxon OID3300032049 Open in IMG/M
Scaffold IDGa0308416_1009404 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090730_OS60
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2660
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F056952Metagenome137N
F058499Metagenome135Y
F089597Metagenome109N

Sequences

Protein IDFamilyRBSSequence
Ga0308416_10094041F056952GAGGMKRRPSYRLLDVFGNVVYSANDLRKVVKRLAQSLVKPTIYSTQGRRHVVFYLENGVVKYLLGNFGESRKSVEERVIRLFRASDIARRVQRHV
Ga0308416_10094042F089597AGGAGGMSRRLSWDEVSACIDRESAERYGRYLRGVVEGETYVPKTTTTPSLVNRTIVLGVIYDWCRRRHRRRPLPATVRAFSWVARYCYPFHPVFARLGIESEDVVEALEWIANDSYSFRFAPATYGVTIVGEHRNGDRRYQHYFAPVPLVAPGISDPTAVPFRLRMATRLVMEAALRAICVVNDDDSYDSVAIRETVRDLLEVAAPLVTPN
Ga0308416_10094045F058499GGAGMPRSLARYERVYAELLSRYLVGPLAKYRDIAGLRLDAEGVFHLVVPNRHGDLVLYSCPYLDGRVVNVDRLPGRRISLRAAVNYDGWDVAVWAERILLENQFAASEITLPS
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