NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308416_1026127

Scaffold Ga0308416_1026127


Overview

Basic Information
Taxon OID3300032049 Open in IMG/M
Scaffold IDGa0308416_1026127 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090730_OS60
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1366
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002229Metagenome / Metatranscriptome580Y
F002372Metagenome / Metatranscriptome566Y
F002795Metagenome / Metatranscriptome529Y
F092113Metagenome / Metatranscriptome107N

Sequences

Protein IDFamilyRBSSequence
Ga0308416_10261271F092113N/AGVDYAVYRWHEHPYADDVLVERYRFGLRLDTWYGAYDTLYGASAGDTLAILPAPAPAPALARRRA
Ga0308416_10261272F002229GGAGGMVTLLTADGVEEVDYTPSDAEIRLSLDDAGLYGMVLRGVTWMRLASGAGWWTVLFGKRLTVTLAPVGWCWVMDGLGNRGYWSATLSAVVADVCAMYGGCVEED
Ga0308416_10261274F002795GGAGGMATTNGLRLRGMVAAYREFISRKDGKVYRVVTVYGDLMSGETVLCQVDGYDVFVDSPDYSRGELVELPARIQFVRDSSGRPALRLYVDEGVR
Ga0308416_10261275F002372AGGGGGMPTRREDSLWPIVHQRASHLRALLDGLDDVDMSIAYELHYYPYAIVELLRVREDAPPLVLRSLYVQANRQWEYHSEFALRVVEAALQLVHEY
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