NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315906_10186403

Scaffold Ga0315906_10186403


Overview

Basic Information
Taxon OID3300032050 Open in IMG/M
Scaffold IDGa0315906_10186403 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA122
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1967
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.7464Long. (o)-83.3444Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015719Metagenome / Metatranscriptome252Y
F046331Metagenome / Metatranscriptome151N

Sequences

Protein IDFamilyRBSSequence
Ga0315906_101864032F015719AGGAGMTMYYTEIDGTEPTISIQVKDTKYTFTNDSLVRLIEEKENLRTELVQVERKLKSTQFDVKEFFQSRYETDQSEILCEVDDVNSLLKDIGSDELTKSWSATVTITATVTGVEAPNAEAAREIIEDAFEINLTVDGDVWVDDLTVESCYPEA
Ga0315906_101864034F046331AGGAGMSHSEAPISITIKTAAGSLVTVRASDGTELDNIVAQGLDAITSATTELEKAIRGTIPTPMTVGQVASALGASISPIDNSTTTLGGRNCPHGKMTAIQGTGKDSSMYRGYFCPAPKGAFDKCKNVYLKTTDAAWNTFVPEQVK
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