NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0318506_10178496

Scaffold Ga0318506_10178496


Overview

Basic Information
Taxon OID3300032052 Open in IMG/M
Scaffold IDGa0318506_10178496 Open in IMG/M
Source Dataset NameTropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f19
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)934
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007659Metagenome / Metatranscriptome347Y
F038033Metagenome166Y

Sequences

Protein IDFamilyRBSSequence
Ga0318506_101784961F038033AGGAMSTDRFDGEAISRADREFLTRLGDHPLLRNPLYSAPPPSLPDYAALTSAAAVEAAQKECFAAALDWLLVNYAFCKSAFMGKGGIISLVDGELGSLTSLRGFMQPYALVCEGPRGGTRIVSAVDDWMRHPLRVHIDKIET
Ga0318506_101784962F007659N/ARQFAVDGPHARNRAGKVIDEYQFAGGASPATTSRTALPVLPKAAYALACDLFDEIARANGLAAISGSRGEAELRCFELDADTEIETRDYGAMTVAELERHMRERRNGTTTMRCSGSFHDRTRVRTDSHLINWGRYGLGIYDTMTETTWHRRTRAPSATFAFLEQLKGRNPLK
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