NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315284_10222754

Scaffold Ga0315284_10222754


Overview

Basic Information
Taxon OID3300032053 Open in IMG/M
Scaffold IDGa0315284_10222754 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_16
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2424
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.508Long. (o)-110.3268Alt. (m)Depth (m)93
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001190Metagenome / Metatranscriptome753Y
F043888Metagenome155Y

Sequences

Protein IDFamilyRBSSequence
Ga0315284_102227542F043888GGTGGMGGSKTNYTPPPVQKDDSFEKYLQYQQQKETAAEQRVATEKAEQKAADDARKASGAAGYGGLRTGVENQLRQGLIGYEDATRQLRDYATKYDMTPPEADVTNLTNVYTKELLPGRRKTGIGAAYEEILGRQASEEEQTKAQERFNQGYYASNEDLRNSLYKSTEYTDKYNKSYLDNYYDTMFGQQTKDEAGKRTGQRTFKFSSNLLPQMAEGTKGRSGVITPQFGDFTGTPSEIEEQQQNVRDTRQYLYSAGLTNLQGEIDKETQKLKNEGQKELAKVTSQGSIYNSLVGSFNF
Ga0315284_102227543F001190AGGMTDTAPNDDYFDINKFEQLLQRLEGSKGRQQRQKSLEGRRDIYSQGLASMMSNF
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