NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315284_11017120

Scaffold Ga0315284_11017120


Overview

Basic Information
Taxon OID3300032053 Open in IMG/M
Scaffold IDGa0315284_11017120 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_16
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)932
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.508Long. (o)-110.3268Alt. (m)Depth (m)93
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015467Metagenome254Y
F023588Metagenome209N

Sequences

Protein IDFamilyRBSSequence
Ga0315284_110171201F023588N/APQRLGKVAWCGLPRIPAMSNPMVLVTWADAHSGVATWTPIDSLDKDEMIVATCGFLLATCDGGKPDHVTVYQSRTMDDDIDHVLHIPCAMVRHIAICTPDQLG
Ga0315284_110171202F015467GGAMRRITATIVTTLTLLIGIGTAHAVQAPEPTHSPSTTRSEVIPKDRLEAQPTIVFRHGDITWLPQLAAEAGWPPRTIKKLSMIVLRESGGCPARKGGDIVDKNCNIIGHDGSNHSSDSGLLQINSVNYRLSRNKWAAVCLAEIACTQEPLLDALTNLRAGLVLFKIAGWDPWTP
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