NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0318570_10339597

Scaffold Ga0318570_10339597


Overview

Basic Information
Taxon OID3300032054 Open in IMG/M
Scaffold IDGa0318570_10339597 Open in IMG/M
Source Dataset NameTropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f23
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)684
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007575Metagenome348Y
F015555Metagenome253Y

Sequences

Protein IDFamilyRBSSequence
Ga0318570_103395971F007575GGAGGVTQDPPRMISVLSGTNGCVGFLRSAGPKGFTAYDADGQPLGLFAEKQAAIEAITAA
Ga0318570_103395972F015555N/ATRGCHSSFYLKRCLVCEGDKPNGSQLNRKFCRRPRCKAKYQKNRALFDLSVTSGHSRAIPAPDAPRSAQSTGIKSAHKDDRPWHIVAGPKITAAVYHCATLPVDPDIAARARVNDWDRIRRENAWCRRPPIPIDVTTRSRWEPCDPSVPDDLNIPDFLKREPAASPEGLAA
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