NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0318575_10078688

Scaffold Ga0318575_10078688


Overview

Basic Information
Taxon OID3300032055 Open in IMG/M
Scaffold IDGa0318575_10078688 Open in IMG/M
Source Dataset NameTropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1568
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005952Metagenome / Metatranscriptome385Y
F006708Metagenome / Metatranscriptome366Y

Sequences

Protein IDFamilyRBSSequence
Ga0318575_100786881F006708GGAMFNADDIAWIDFEVAAPEIDLKAAGTFRYVAEASTHAIVLAHAIGNAPALTWHADGAILDWDCAPDELRAAFERDAPLAAWNASFDAAVWNYATLGFPFLAPERVIDPMVQAGVSNLPTDLESASRYLGGAGKQKDGKALIRMFC
Ga0318575_100786883F005952N/ANAAFAALQSAGFYYDDVMKAEMRSPKQVELRAKARGLEIPKELIGSRRSGVSLVRSENAHAPVPGRVEIARTFSEALKALQGGGQA
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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