NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308310_1001189

Scaffold Ga0308310_1001189


Overview

Basic Information
Taxon OID3300032056 Open in IMG/M
Scaffold IDGa0308310_1001189 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20090730_MS65
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11654
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (75.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5387Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015070Metagenome / Metatranscriptome257Y
F051766Metagenome / Metatranscriptome143N
F052439Metagenome / Metatranscriptome142Y

Sequences

Protein IDFamilyRBSSequence
Ga0308310_100118911F051766GAGMAIKRQSIISGQYAFSGVEDNGLVTLTSQVDDIYIIEIQSPTQLFSFISPYDAPIMVDKTIYQVTNVTDYSGASDTAIYSTVNTSRGNKTIIECEIKAIGLRSNSSVIFSSQEKWIVYPEKIYQVVNTGTQSFIFTDNSIAYLRLTGKRILPVQLAGNPLT
Ga0308310_100118912F052439N/AHQLLEAAARLQITPSEVIVAALRQYLERLQTPVNVNGAKDGLQIAEILDRLEQLERRVEALEVAKPRRVSVAEAPPSDLAALPVLELRRLARRVIGPGGDKNPSTGKHLRRAELLAALRQASTSRVSET
Ga0308310_10011892F051766GAGMAIKRQSIISGQYAFSGVEDNGLVTLTSQVDDIYIIEIQSSTQLFSFISPHDVPIMVDKTIYQVTNVTDYSGASDTAIYSTVNTSRGDKTIIECEIKAIGLRSNSSVVFSSQEKWIVYPGKIYQVVNTGSQSFIFTNNSIAYLRLTGKRILPVQLAGNPLT
Ga0308310_10011896F015070GGAGGMEELEQLGFVGIADYIDSQDDWRKPEWKSLNREFFTVLVDDLLDFLNDYYLPL
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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