NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308310_1002989

Scaffold Ga0308310_1002989


Overview

Basic Information
Taxon OID3300032056 Open in IMG/M
Scaffold IDGa0308310_1002989 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20090730_MS65
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7162
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (78.57%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5387Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026171Metagenome / Metatranscriptome199Y
F029920Metagenome187Y
F029994Metagenome / Metatranscriptome186Y
F031690Metagenome / Metatranscriptome182Y

Sequences

Protein IDFamilyRBSSequence
Ga0308310_100298913F026171GGAGGMMSRSLRKLREAVKAARLADLPVAKALKALADMPEARAFQLEPDVLRRMLIESLPEQYASVLFERAGYRVKMPLADLAYLAQYDQTLAELVVSVVLYLDK
Ga0308310_10029892F029994GGAGGMPVSFPGYREDIPVVPGRPLLFVRCRQCGYTTVARSPNAATVRGWQLPERWPYDAPQLGATVDGVCHSCASAHSR
Ga0308310_10029896F031690AGGAMNQNPNSHPQNLLYCASFDVVVGTDRCRLYLLASNAEQAAKYTWPTKTRKRTRYVVSCERLAGLQYADEIEAAAHRYGFADNRPHICDVMENHKSLASVIIETNALRWALSFLPDDAVKTVAISDKGLSIQGVPLGGIALYGTEILVRSRPLRLVFEQMPRDTAAHVDILGHRNARALKISLGTEFHYVFDYRNGFTAFIPRGEER
Ga0308310_10029897F029920GAGMISANALERAFQTERPLKGFVVPGLALSYQPREYLAIGRADRPPDDEDIALVIALAREAFIVLAREPQCKVVEINGITWYLARWLLKRESVADHLPQKAKG
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