NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308310_1005377

Scaffold Ga0308310_1005377


Overview

Basic Information
Taxon OID3300032056 Open in IMG/M
Scaffold IDGa0308310_1005377 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20090730_MS65
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5158
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae → Gemmata → Gemmata massiliana(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5387Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F058499Metagenome135Y
F096158Metagenome105N

Sequences

Protein IDFamilyRBSSequence
Ga0308310_10053773F096158GGAGGMSKASTHRFVIESTQFAKLERALSVALPAAKSLGVDAGIFWLRDSIFAATPYVSIGIANFDLELEELPECIAISQVAARPLLYELRTHLVRYLEKIEFVVTRDQVVFTFEYDWRSREKTPPPLISRYSGSWRPRMTPREHYELLAAHRPYFECTLATKEMRRKLRSHEEYDYVVLEDFPNVISHVTVSRSLLLAFLEAAKDEDTTFRLEYYGDQRCVVCRAGDVIAILSVID
Ga0308310_10053778F058499AGGAGMPSSLARYERAYAELLSRYLVGPLAKYRKVAGLRLDAEGVFHLIVPNRHGDLVLYSCPHRDGRVVREDRIPGQRISLRAAINRDGWDVAVWAERVLLENQFATSEITAT
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