NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308310_1006250

Scaffold Ga0308310_1006250


Overview

Basic Information
Taxon OID3300032056 Open in IMG/M
Scaffold IDGa0308310_1006250 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20090730_MS65
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4752
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5387Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022604Metagenome / Metatranscriptome213N
F025421Metagenome / Metatranscriptome201Y
F038570Metagenome / Metatranscriptome165N

Sequences

Protein IDFamilyRBSSequence
Ga0308310_10062503F025421N/AMIDLTKVRRIDRNAPGSFMEYARLQATIAEGDLMAIARALENYGVDVRELSFNELTDVIKHIAGEPTPLGDTSATE
Ga0308310_10062504F038570AGGAGMPATHLRRVQLGQQSSFGTPVAATSILRGVRDGSVTINHNDAVVEELGRSVSDLVIFSQRHAEGELELQCTYEDVLYGLFGLFGPVAPSGGARTFNAPITNYAAPQIYTIEYGTTGAEYRVVGGIIKEWTLRYEANAGVTESWSFIGRSVQANALTGSLPTRIVTPVVSTQASWFMDPIGTAHGTTPIPGTVIEAELSINTNRHLKVFEGSQPITWGEGRWEAQLSITAEFNATTKTWVDGLLLNPVARNFRVNFVETANARELRIDFVGLLAEPIELFGDREGNMTAELTFKALVASPLNNWLQIRTINGVATLP
Ga0308310_10062506F022604GAGGVLSAVNAVHAVVAAVPGIVAAYTTVPMSTSTAALPMALVTPAGENRRQHAHELVRIESLVRVRIVHSPVAQGVTEAQQSALYALADAVMAALMSDVTLGGQADHIASLDADEPAIYTLAGTDYLSISILTRVVEKI
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