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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300032057 Open in IMG/M |
| Scaffold ID | Ga0308421_1003111 Open in IMG/M |
| Source Dataset Name | Hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20090730_MS60 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 7564 |
| Total Scaffold Genes | 11 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (72.73%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Candidatus Thermofonsia → Candidatus Thermofonsia Clade 3 → Candidatus Thermofonsia Clade 3 bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wyoming | |||||||
| Coordinates | Lat. (o) | 44.5387 | Long. (o) | -110.798 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F007404 | Metagenome / Metatranscriptome | 351 | Y |
| F014738 | Metagenome / Metatranscriptome | 260 | Y |
| F016100 | Metagenome / Metatranscriptome | 249 | Y |
| F072382 | Metagenome / Metatranscriptome | 121 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0308421_10031112 | F016100 | AGGAGG | MLKSVKIERFKDCEELVRVLSRSEACPATNKDIIRPLNYELFIGSHLPEPDWHRLGALVVALFRSFAVVDVEIWQADNGDWIADALVDFGGVRRLRKGEGETPLHAVIELITDIQRY |
| Ga0308421_10031113 | F072382 | AGGAGG | MKTIYHTKDVWFPPFSIKIEPKRGTWFADVYVRYAENPGLDDKYNAYIGAANFLSATPIPAVDRRDVAKAIESLVFDYGLVDLVIYPTRDGWSVHITLCPELENQYLRGEGATPADAIRNSAPYPPPLRNV |
| Ga0308421_10031114 | F014738 | GGAGG | MKLEVLMLVSAFALAFVHPDAAQVAATAVLVLLVTRIERGRRVRKKKSAPVAH |
| Ga0308421_10031115 | F007404 | GGAGG | VDIIEILQLLAAGHAGLTAADYLWNAVFGAIGAATAYLADTNGEVFLPRYDREQHSVELGALGRVLVGAGAGTLVGYSGYVPFVAGVVAPTLLPLLIDKITAFVERRRK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |