NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308421_1003541

Scaffold Ga0308421_1003541


Overview

Basic Information
Taxon OID3300032057 Open in IMG/M
Scaffold IDGa0308421_1003541 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20090730_MS60
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6978
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (81.82%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5387Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002982Metagenome / Metatranscriptome515Y
F007976Metagenome / Metatranscriptome341Y
F031016Metagenome / Metatranscriptome183Y
F043176Metagenome / Metatranscriptome156Y

Sequences

Protein IDFamilyRBSSequence
Ga0308421_10035411F031016AGGAGGMTTITIWKGSRRVVLGDDIEFVEHETFIGEELGAVWEEENSRGTQTVFYRTEGGKIVVHQVLWSRWEGEATHAYIHVFPSLEGVNGAAAMFWRELAQAGIIPRPTLTLDEVDGR
Ga0308421_10035413F002982AGGAGGMKIAFERHPHAICVVLNDAGECDRIINVDRASDAFRAFGIFTRDVAPAAYKPLDTLFALPRVVCVEIERREGGWRVEVAYWHKGLGTLAQYEEDAATLSEALARCVWALAR
Ga0308421_10035415F007976AGGAMTSSELAHFLRTAIDIQAPPFSGIHVADGVMAATDRVMLVAKKFDVVFLRGEGAISPKAAKVLEALAEGTWIGSIAVVGNRVTVTAQSTRYEENVGEVASGYCEVKLPEFYCPRAPVARMLAALTDEQQGWVQVVENPRIKNVKEWSVKEFVALVDSPHGGYELFRLRDIDDEHWYSVAQLRRGLRLFGARARLSVRRNAKGWLAFEDGYGHTFAVTPFVKHN
Ga0308421_10035416F043176AGGAGGMQNYRIWEGERTFLPGDDASKYTVVEIVAEELGWFEDVNPDGFSGTAYYVYRAESGEIIINVVNKNYGIGEPNYGTIYRFSSLEEATQSEQRYALEELRLI
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