NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308421_1011595

Scaffold Ga0308421_1011595


Overview

Basic Information
Taxon OID3300032057 Open in IMG/M
Scaffold IDGa0308421_1011595 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20090730_MS60
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3244
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5387Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002970Metagenome / Metatranscriptome517N
F004791Metagenome / Metatranscriptome423Y
F105262Metagenome / Metatranscriptome100N

Sequences

Protein IDFamilyRBSSequence
Ga0308421_10115951F004791AGGAGGMTKPAEIYDIDTIRVDRSALTIRDAASVLNNELTAPVVARLVRKAIGDQADRFPLRALKAVYERVLPQIFEPDEAVRSRVAGLVPAVGEITLGEYHQFLDASERKIAFPEVAKTLLIKAYGEDILNEPYAAA
Ga0308421_10115953F002970GGAGMSSSSVIDIIELLAGLAVQYNSAVVPVRRLSTQPNWSDAAQLPVRIIPTLGGLRLVEGGVYTPARATRAVWEIDDLLLVRDVGMGRGVADTATALVDYIEDYVAQLRFAWLTRGDVQLLNVSGIVDIVRYGERAYEGVVMTTRFAHLIRAPSA
Ga0308421_10115955F105262AGGAGGMLVQETIQPLLRFFNAAASGTDTAVVSIANAQAVRIVAHTGTVTGSASLQVHVNDTNNTNNSAQLTDKAIASLASNRTYEIFVTGAEAYAAKTHASHMFVRIAGTGTVQIAIEISAFPARDVPATLPTDWTRIL
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