NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308421_1040734

Scaffold Ga0308421_1040734


Overview

Basic Information
Taxon OID3300032057 Open in IMG/M
Scaffold IDGa0308421_1040734 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20090730_MS60
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1360
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5387Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002970Metagenome / Metatranscriptome517N
F005302Metagenome / Metatranscriptome405Y
F064295Metagenome / Metatranscriptome128N

Sequences

Protein IDFamilyRBSSequence
Ga0308421_10407341F002970GGAGMSSSTVINIIEMLANLAVQYNNATVSVRRLTTQTNWVDAAQLPVRIIPALGGLRLIEGGVYTATRATKAVWEIDDLLLVRDVGMGRGVADTATALVRYIEDYVARLRFAWLARGDVQLVNVNGTVDVIRYGERAYEGVTMTVRFAHLVRAPSV
Ga0308421_10407342F005302GGAGGMSHTGVIDGLFAGNYAVEISTNGTAWTAVSNATVKIDDVELSRPSGEAYVGGSSDYATVTIGKREPVELTLTFLYSEASGSAANTIFDAFQSANPRLGVRWSPRGLVSNARAYATSNDSATFGLGVITGVTHSALDPSDPEPFVVMVTVRAPAIRQYALGTNPTNLNPAS
Ga0308421_10407343F064295AGGAGGMERIPTEIYDIDAIRVDRSALKIRDAATVLNRELTAPVIARLVRKAIGDQADQFPLRALKSVYERILPQIFEPDEALRARVEGMVPDISRITLGEYHQFLDESER
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