NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308419_1007044

Scaffold Ga0308419_1007044


Overview

Basic Information
Taxon OID3300032058 Open in IMG/M
Scaffold IDGa0308419_1007044 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20090730_MS50
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6438
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (80.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5387Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016816Metagenome / Metatranscriptome244Y
F029452Metagenome / Metatranscriptome188Y
F033055Metagenome / Metatranscriptome178Y
F036249Metagenome / Metatranscriptome170N
F050400Metagenome / Metatranscriptome145N
F092114Metagenome / Metatranscriptome107N

Sequences

Protein IDFamilyRBSSequence
Ga0308419_100704410F033055N/AVNDGLYVYNTAPDNLLRLGMPSEVVNCEVGVRGTGSFFNPPLLLNFYRASTLIDSVSVPTTNDWVVHTLTVDRWDSVELLVGIGGTVGVDFIRAEPFGGLPTRRTLTGVGV
Ga0308419_10070443F016816GGAGGMNTIYNPLTGQWERVDDLVRPFPVIARDTRLVVANNTTSFAPTVATGNSPGHTDLFGNTNSSRANIGIAVGSTDADIVIPDPWRIRRFIVVCNRSVSGTTNVAITCTVLGRLLAPDETITPWRGIVSVSDVAFNNDAPMRFALPSSLAGVFGYDQYRIVFRRDPDSDPAPQLSLVRVYAE
Ga0308419_10070445F050400GGGGGVITVGLYNQWYQPVLERILEPARAVLLLTADGVYTFYSITPTPLEHNYPITSAIASKHYALPTPSMPPYPIYRRSGETIALELCVDTSESYTIQYQHNGTQQPPLTIPALPQPNYPLYQRTPIYPFAHNHLAGYSYDVRIVGSYQAGGMDIAIPNTHSGIITTVCIPLGDTTYLYSAYRNSSGEWKIIIRNSNGNELPNGTDIDTRVRVYIWSYYR
Ga0308419_10070446F036249GGAGMQFNPNTSHYASAVGAWLDSNFRDQFTITVAFLEKLKQRGAFKRGAAYLVQPVFGTGNNTVAGVTNFNTAMSIPADSGLSAVYTWSWYQGLTTVNAQEAAAINTEYEMVDLLEERLRSSVAQFGQVLANDLFSNTDANLGKIAGIPYAVDRPGTTPNSYGGINRGNTPNPWWRCVLVDATNNPLTLQRLAQAYNLATENGGNTPDIIVMPTAHFTAFEALLLATQQYKQDDELARVGFVGYLFRGATVLFDPRVPNNTIFILNSKDIMLVTQTERPSAEPVEFPDRLVRGYKHGFAAALVAKRLNSNARINNITT
Ga0308419_10070448F092114N/AMRELLSVNRQKLNDLLGDNPPRRDTWLIKCRRLREIVGNLPSNQTISTSIPEGHSNLLLININIKAHAIMQLIRGTVMDFGVDSEPYQMQFAEFLASNELALREAIMQRLVYGLGAVCVVGDKQSGWRLQSVSPNDIWWDCTTGDVMQPKWIARGYRDSDNTDYREVWYVDVFHRYKVGGADVETQPNPYGVIPIVLFPALFVPDTVYPIGDVELACPQQFILDEIRRTYLNMARRGAGFFSVKRSSIDETELQRLQNPDEVYVLVNEQDAIMPIPTPAPNPEWQALEALAKQDMDALMGISEYVRGVLPTGRAKFATEVVAAVAGQTVRIQAEWYNTKVALERLAMVYYKLHNPSGTAKPRALEDSLTDVNQLMRADMVSNTADGAVGNNPVAQSV
Ga0308419_10070449F029452GGGGGMIYEYRCAECGWLTVASRTVEQRDVCPRCERCGALTKRVFPPRAQIIVPRAFSLECAREAAKQVLPQNDVEKQYWDTFGIMDSDGDGE
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