NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308419_1018725

Scaffold Ga0308419_1018725


Overview

Basic Information
Taxon OID3300032058 Open in IMG/M
Scaffold IDGa0308419_1018725 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20090730_MS50
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3228
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5387Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F042064Metagenome159Y
F061618Metagenome / Metatranscriptome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0308419_10187251F042064AGGMNSIVRNYLAHALEDTNRLAKRLNRGSMTPVVAMWQEGHRLVIASCDSYQQHEFRLFIFRDDPGFPPLLHERVLAFSPTAIAATARAFYEQLGENDLLHIDYDDDQTTISLLAPGITIGLKATESLHKDHIRRFAATFTETERPDVIKINAKEFLSALPKPRRNNERIYMFVHFHECTWQVGVQSKLNSWQPTEHNGVFDAQDVQGTPDCKLNVQMLREALEVAERY
Ga0308419_10187254F061618N/AMRSTDGLDTRSRMWYGGGMKDFLLQPLSPEGNYRILAVWPRKFLVPVIRLIDRTLAIPNDPAIVILEFNPDEYGAHRWRLARELCWAGIPIFDEGQGRLRVYCPRPGAWTVIEAFQFYKERVSPDTVKLRNLAELGDHQGIADIVGEVNYRLVSENTLITEGALLRGSKAYISYATYELPEGAELVSA
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