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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300032058 Open in IMG/M |
| Scaffold ID | Ga0308419_1026975 Open in IMG/M |
| Source Dataset Name | Hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20090730_MS50 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2418 |
| Total Scaffold Genes | 6 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (83.33%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wyoming | |||||||
| Coordinates | Lat. (o) | 44.5387 | Long. (o) | -110.798 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F004307 | Metagenome / Metatranscriptome | 444 | Y |
| F005028 | Metagenome / Metatranscriptome | 414 | Y |
| F008499 | Metagenome / Metatranscriptome | 332 | Y |
| F025895 | Metagenome / Metatranscriptome | 199 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0308419_10269752 | F004307 | GAGG | VPKSDRKETEMFKELISNGKHSERPALNGAYVGYFLGVKERQRATFETRLSPEPELEDVFVFEFEIEDGELEAPVRVSKWVRKPKRLTHPSNGKATNLYKTLAALYGVSLMTDEQLNAAEEFVQTAAVGREYQLTLETKPSGWVEIIHIAPVRKAHQRKKEDEEIPF |
| Ga0308419_10269753 | F008499 | GGA | MKKSHSSEPRWKRKEREALRALQAIFGRVSDPSLARLLTSTGRVGHLTRFGVDGFVGNDPGFAVEVKARKGMLTKATLDALLQTIDRAARFERIPLFVLVFGDDVPTRTENGARVEREWVMMPRRVLEEIVGKERKDE |
| Ga0308419_10269754 | F005028 | GAG | VREDDLHAAMAFFAARLRGAEVTEAGLRRWTRHKLRNDAQAVAELMLTIGYRATFIRYFLRYHIRAVDPESDDEDVTLAVADLHAAAKRLRQPYRDLAAVCLRWGYVHETVVQMLSKALDKRGEVDIQKGRMGYE |
| Ga0308419_10269755 | F025895 | AGGA | MSDLIAWIVAGGVILALVNSNIADGLLNALDLSDNLKRAVDWARGVRGVPAGVASVCFFILAYVFGALAYRYDLVPTWRFIQPIAADVLATGAEWLTLFTLFVTLLPTLIELATVGLMQRDIKALQWMMYFFIFFDVVTDYREAVALVEVWQRGELFVPLPGALQGTTMVLAKVGWTFAASFAFEFLAILFAVTALLLAANVRATGGGGR |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |