NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308419_1039279

Scaffold Ga0308419_1039279


Overview

Basic Information
Taxon OID3300032058 Open in IMG/M
Scaffold IDGa0308419_1039279 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20090730_MS50
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1782
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5387Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002970Metagenome / Metatranscriptome517N
F005302Metagenome / Metatranscriptome405Y
F064295Metagenome / Metatranscriptome128N

Sequences

Protein IDFamilyRBSSequence
Ga0308419_10392791F064295AGGAGGMTTPAEIYDIDAIRVDRAALTIREAATVLNNELTAPVVARLVRKAIGDQVDQFPIRTLKRVYERVLPQVFEPDEAVRSRVEGLTPNVATITLGEYHQFL
Ga0308419_10392792F005302AGGAGMSHSGVVAGLYAGNFAVEISTNLTTWTAVSSMMVKVDDVELSRPSGEAFVGGSSDHATITVGKCEPVEITLTFLYFESANSASNIVYNQFQSADPLLAVRWSPRGLIGGARAYGTSNDGGTTLGLGVITSLTLSAIDPSDAEPYVGMATVRTPSLRRYFLVANPTDLTPL
Ga0308419_10392793F002970GGAGMSYSSVTDIIELLAGLAVQYNSVVVPVQRLSTQANWSDAAQLPVRIIPVLGGLRLVEGGVYTPTRATRAVWEIDDLLLVRDVGMGRGVADTATALTDYIEDYVARLRFAWLARGDVQLLNVSGMIDVIRYGERAYEGVTTTTRFAHLVRAPST
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