NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308419_1053306

Scaffold Ga0308419_1053306


Overview

Basic Information
Taxon OID3300032058 Open in IMG/M
Scaffold IDGa0308419_1053306 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20090730_MS50
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1391
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5387Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038570Metagenome / Metatranscriptome165N
F093039Metagenome / Metatranscriptome106N

Sequences

Protein IDFamilyRBSSequence
Ga0308419_10533062F038570AGGAGMPATHLRRIQLGQQTAFATPVAATSILRGVTDGSITLNHNDAVVEELGRSVSDLVVVSQRHAEGEVELQCTYEDILYGLFGLFGPVSQIGGSRTFNAPLTSYAAPQIYTIEYGATGAEYRVVGGILREWTLRYEANAGVTESWSLIGRSVQANALTGSLPTRNVTPVLSRHASWFVDPTGTAHGTTAIPGTVIEAELTVNTNRHLKMFEGSQPLDWGEGRWEAQLSITAEFNSTAKAWVDALLTDRVARNIRANFVETANTRELRVDFVGLIGEPVELFSDRDGNMTVELTFKALVAGPLNNWLQIRTINGIATLP
Ga0308419_10533064F093039GAGVTLLLHLAETWGVPPWVLEQELSLFWAEAACEYEREKVRRMKREM
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