NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0318533_10155881

Scaffold Ga0318533_10155881


Overview

Basic Information
Taxon OID3300032059 Open in IMG/M
Scaffold IDGa0318533_10155881 Open in IMG/M
Source Dataset NameTropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1618
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F053003Metagenome141Y
F071916Metagenome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0318533_101558811F071916N/ALWGVAMGADMKSHFRAGAKVCSMAVMVLLVIGALGPAEWTPRTALGWQIDHFLGYFAITLLVCFAWPRPLLVGGVLVGAAFLLEGLQAFTPDRTANLVAASCGAGGVVAAALVAELCSRAWGWHLKSARDTKLRA
Ga0318533_101558812F053003GGAMALDAGTALKRPVLSAPSDEDFCFTLLTASPKLKHRLRTGAKACCVPIVVLLVVAALGPEKWAPRTHLGWQFDHFIGYFGITLFVCFAWPRPFMVGGVFAAVAALLEVLQAFTPDRSAYLPAIFYGAAGALAAPLIVEFVIRVWRWRPKGEVNVRQARSKSLAFTGSPNPA
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