NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0318533_10290099

Scaffold Ga0318533_10290099


Overview

Basic Information
Taxon OID3300032059 Open in IMG/M
Scaffold IDGa0318533_10290099 Open in IMG/M
Source Dataset NameTropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1186
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → Solirubrobacter soli(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F078072Metagenome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0318533_102900991F078072GGAGGMTSTGDTKATKNGPGSSAVKNGPGTISDALTAFEAQATKLPAGPAPDPNVAVACALGWAVGDAMTCTKYQAFDHLVKVPELDDPFDQWNLLVNQIISQCGHLNNHLKSTNADFDLSDQLKIAASLSLGSTPGDVKTVIGDKNVTVTELHTGILTVLWSVASPLAKAYQLGHEMEQMCATPIAEPSATVSTEPSATVSASVQSHNANVHRLLTALASKLPANAAHATDNSLRLWSASLSAGGEESPQDLLLQGRRWHDVLAGDVSGKDGLRLTDYVAAADSVAGKLGQTARQVVARFKVWLIVALIVLAGGIVLIVVGTKGAIGAGITAVLAAFGLTWKGIGDFFGRAAANAEE
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