NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0318505_10031065

Scaffold Ga0318505_10031065


Overview

Basic Information
Taxon OID3300032060 Open in IMG/M
Scaffold IDGa0318505_10031065 Open in IMG/M
Source Dataset NameTropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2178
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001027Metagenome / Metatranscriptome802Y
F074090Metagenome120N

Sequences

Protein IDFamilyRBSSequence
Ga0318505_100310651F074090GGAVDFDDARAGMADIEARQAQAVREAASWRWPWWYPAATAALMVGISVAMDFEQDPAMLIVVYCCGVSLLQIPLAARMRVRLHRSRNTFRVNWPLGALLLAVAAVYVLARVALGAAGAPLPS
Ga0318505_100310652F001027GGAGGMNAAAATGELVPPKRIPVNGRPIRLRWLQQVIWSFLAANVGALIIAGLYYLVIQVRWHIGGHTYLFLKPSWDHLFSYGGWAADRHNVRDVYEALLATLFVKSLLANWRKGIWRAPAWYVLLSPVLIVVVAFPIVAAGIALIDHVLPWLWHHIFAHHVLHNPAHLPSRLDWLGTYLSGYPWQPVVIGILAGLVVHRVYAPAGNTVQLYFIGRSVDRTRDAIAAGEENPHRHLPRWPWPPVIRERAAWIMTSNQPVPDRTFDIRWAVRVVMVVFAALAICGVYARYWVGKGHAGFG
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