NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0318505_10058391

Scaffold Ga0318505_10058391


Overview

Basic Information
Taxon OID3300032060 Open in IMG/M
Scaffold IDGa0318505_10058391 Open in IMG/M
Source Dataset NameTropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1672
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F068183Metagenome / Metatranscriptome125N
F073913Metagenome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0318505_100583911F073913GGAGGVTDAPNGPWFTALPPCEALVPCGQGRHTVRWEAGEFRLPGHADPEAELVLAALGGEKARCVEIAEAWGRHVADLTVLGIGPRSPADEIVVSWDDVEVAAQAATSGTGWGLPRHGPMRLASAPTAAIARAAIWRRQYQQEAGQASRRRLDMLSLLALGSGFQIRLIGQVIAAHADRPDEPGEHGHSIRPALQAALAGRIAPVAERWLGIDPDQVAVSLHRGPGWGSVELTGRGQRRRLLVSLPAWWLARVWACHQAG
Ga0318505_100583912F068183N/AYQLDHTPGGDLEWPDEITLRPAPPEDIRWLDIAPPYRQPARVDLRPSGSPGGPGGSGEAGDQAQVSETGLSPGEHLLVMLAERLLTGAPEFPRGGLLAARHAGPRRAMAAGFGDIIAALEAADVLSPLSPVPARLATLCASLDVDGHGIGVPPAHDMPEPWLSLLAHYQRRKPDPVQMRDGYAALAAALPELDGLRLTLLGLEHTEGSSFVHALVQGQTPDPQPGPLDVDLNFPLSLWLRDSGGRWHLGCPDRWNRGGRESTVRLRLVPSLTRPADWVEVLAGGRSAEARARLPLRWRYP
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