Basic Information | |
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Taxon OID | 3300032060 Open in IMG/M |
Scaffold ID | Ga0318505_10125449 Open in IMG/M |
Source Dataset Name | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1178 |
Total Scaffold Genes | 3 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico |
Source Dataset Sampling Location | ||||||||
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Location Name | Puerto Rico: Rio Grande | |||||||
Coordinates | Lat. (o) | 18.321 | Long. (o) | -65.8172 | Alt. (m) | Depth (m) | 0 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F001698 | Metagenome / Metatranscriptome | 650 | Y |
F006575 | Metagenome / Metatranscriptome | 370 | Y |
F057529 | Metagenome / Metatranscriptome | 136 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0318505_101254491 | F001698 | AGGAG | MAGVINDIEALAEFRAHLMRFNHELAENFATMQAHWRELGEVWRDDMYRLFGEALDEVTPGIATYLSATEGHEAHLAALIERLSGYLETGAG |
Ga0318505_101254492 | F006575 | GGAG | MTTESATATSPYLSLRQAVRPAILAHRLLAGDQERAGKLATECEDLLYLTGELLKAAGRARILADASPPRMPEEGGGDRQAQLLEAYADAGLLWAKVVGSSLALAGVLVERGEWEDVRALASFLASAGEQSAAAELRIQLGREVREAPEEYPDRNREVNRFLPPLASAIHAIMKEQEADIPYHSRVEHIATGGVAKYPDIVQTSLDELAAEFEGICRRPGGKTT |
Ga0318505_101254493 | F057529 | N/A | GLRAVLRVLSPAESDALLGVSAAASLDDDRALYRDTEWPAEQVEKFKPYSVASLFAFAREGSLTTSGKWSPA |
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