NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0318510_10442531

Scaffold Ga0318510_10442531


Overview

Basic Information
Taxon OID3300032064 Open in IMG/M
Scaffold IDGa0318510_10442531 Open in IMG/M
Source Dataset NameTropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f17
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)557
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009154Metagenome / Metatranscriptome322Y
F089662Metagenome / Metatranscriptome108N

Sequences

Protein IDFamilyRBSSequence
Ga0318510_104425311F089662GGCGGMPFDQLHRREFITLLGAAAAGWPLVALAQPDQTSQPTPNAVSVEQSAVFDVMPVTGTLKETVQKQQQLVWRARRSPNERRFELTDMSVALLRNEAPGEVKIT
Ga0318510_104425312F009154N/ASAGRRVRIYATRGPYVRIYPQDTITPCKWAHEKVLSK

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