NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0315282_10029833

Scaffold Ga0315282_10029833


Overview

Basic Information
Taxon OID3300032069 Open in IMG/M
Scaffold IDGa0315282_10029833 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G07_20
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6952
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (55.56%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5099Long. (o)-110.3581Alt. (m)Depth (m)87
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F074282Metagenome119Y
F082002Metagenome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0315282_100298336F074282N/ALWFLLEKNDAVFYALLKMGHQCPQAITPHPNPLSKKIGTAWLVEVEHGHNDLGKHGNYTFWYKIVDDPKKAEWGCRQGLNDLT
Ga0315282_100298338F082002N/AMEISKKITGLESAAAKLHDDIGKLSLHKAAVAHAEPVTVALTNDLAERADMLQIRATSDSVTLRPKHYLATQDFRVVSEIVRRHGGFWSSERRVFIVRKTR

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.