NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315279_10294843

Scaffold Ga0315279_10294843


Overview

Basic Information
Taxon OID3300032070 Open in IMG/M
Scaffold IDGa0315279_10294843 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G06_20
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1179
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5094Long. (o)-110.5094Alt. (m)Depth (m)88
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038042Metagenome166Y
F065350Metagenome127Y

Sequences

Protein IDFamilyRBSSequence
Ga0315279_102948432F038042GAGMKTGPKPIGRLLIPKILEALVEVGCDLRIWAITTRVRQILNRPQLRWETVHKYLEQMVREQMIFRYEDPSSIVTYSKNPIVREKVLF
Ga0315279_102948433F065350N/ASSFEQFCSQFDWYDFKILSSFLTKLDYPLDNTTQSLHSICQLFKRRNIQISKMTISRRLKGLATLGLLRRLAKTNPAFYEIARGQEALVRKVVYFKHTEDLLEL

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