NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315315_10002717

Scaffold Ga0315315_10002717


Overview

Basic Information
Taxon OID3300032073 Open in IMG/M
Scaffold IDGa0315315_10002717 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 40m 3416
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16188
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)27 (96.43%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.7468Long. (o)-122.0193Alt. (m)Depth (m)40
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009527Metagenome / Metatranscriptome316Y
F054789Metagenome / Metatranscriptome139N
F067591Metagenome / Metatranscriptome125N
F090175Metagenome / Metatranscriptome108N

Sequences

Protein IDFamilyRBSSequence
Ga0315315_100027171F054789AGAAGGMSNREQQRKFDRIAASRMSKIKGGIPSHVALSNHRSITLRNKLRRLGLEGPHIEAALSMVDEMGLQEVMSHQPLGSRFASMAQAKRPAKIWKP
Ga0315315_1000271714F054789AGAAGGMSNREQQRKFDRIAASRMSKIKGGIPSHVALSNHRSITLRNKLRRLGLEGPHIEAALSMVDEMGLQEVMSHQPLGSRFASMPHAKRPAKIWKP
Ga0315315_1000271715F009527GGAGGMKKNCFPPSIINLLLKEGQRWKVEGEFREALGTGIIPIIASARGGKTSLAYAFIDYVIEHTNRPVILDSFPQVVIDEGIPDHWKGRVSNTSFNDIASVDEPAVWLLDDSATHFNSRSAMSSTNQTLAKSAGVLSHFGGGMTVLFTTQSLSGIDLSLLRYTTISPIIRWVDRDLIAQERKEWKGEIEHGQYELRKVSKDPRYRDFFWSSKDRCLVQAPYPKFLSKKEDARKADLLSRPMRYHSIEDKQIMLGIIKPPAKRRAKRKKVNNDEQ
Ga0315315_1000271722F067591AGGMTTWQKQIKQIAMALSVIGGLWMALTVGLGDVFNIITDPASVDAATAASLGGIDFIDRVAVAGVVVTLAGSAGLGLVSVSGNNPPALNTILRYAPLIIGFVAFSAFGTEAWDLVTGNRTWANFDDIQNSYMLFLASSMVAGIVGLLDRR
Ga0315315_1000271728F054789N/AMTSREQQRKFDRIAASRMSKIKGGIPSHVALSNHRSITLRNKLRRLGLEGPHIEAAISMVDEMGLQEVMSHQPLGSRFASMPHAKRPAKIWKP
Ga0315315_100027173F090175AGGAGGLSDEEIQTSNEKGGSNGRTWADVFVGATYITGGGLFLLAMGIGIYFLVGEVPVWFFIAMLTSLIFIPFMIERAKDDASLILVSDGPHRLTEYRVGNKVGLEIEGNSVLFQSSTGVLRQVLSSIDIQNKTAIGSEFANHTQIDQVRDLTTLQRMVEMLQSTLKETRISSQTVGVEVEKQSIEIVDWALKTIYGAIIPTEISEAFGVKEDSIQMEFDETIEDMVEDFQ
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