NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315315_10012218

Scaffold Ga0315315_10012218


Overview

Basic Information
Taxon OID3300032073 Open in IMG/M
Scaffold IDGa0315315_10012218 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 40m 3416
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7919
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (69.23%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.7468Long. (o)-122.0193Alt. (m)Depth (m)40
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F053556Metagenome141Y
F065843Metagenome / Metatranscriptome127N

Sequences

Protein IDFamilyRBSSequence
Ga0315315_1001221812F053556AGGAMAEMVGMMSGGNDFSWNSDTIFDKIGNPEKREEYLSELSGTGNNEREMIEQLRSLTKQEMKAVLYDLPPETREEFINDYYGIPKINPENMSASPEMTITGPETAPTQQSGMLPPLELNASVNF
Ga0315315_100122183F065843AGAAGGMEWRYRGMMDKDGVCTIREVFYEPDGTISSFAVDPAVPTGETPDELVSHMALMLESLQQPFLLEGDFIPESDNDELQFTFIREDENKYH
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