NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315315_10199772

Scaffold Ga0315315_10199772


Overview

Basic Information
Taxon OID3300032073 Open in IMG/M
Scaffold IDGa0315315_10199772 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 40m 3416
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1866
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.7468Long. (o)-122.0193Alt. (m)Depth (m)40
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002249Metagenome578Y
F012285Metagenome282Y
F056889Metagenome137Y

Sequences

Protein IDFamilyRBSSequence
Ga0315315_101997722F056889N/AMKNLSHEEQITLILIGIAIGIGIGFVLKTFVDTYYLIGSLPL
Ga0315315_101997724F012285AGGAGMYHEDSKSFLVFGKQLNQIIAILQMMSDKNPDIQPLNEFIQYLKDMNPYEDMLNGFIFGDQETMPDEVRPVGKRDVMTLEEMMDDLQLKFMEKRNGKN
Ga0315315_101997726F002249N/AMRYGKKYKSYPYTVPINHKALQHTKIKELQVRMMKWAAWVKDYKPKYNGIGSIVLHKNKWQDRFTFTLRCQKRAGELTSDELEQLNYYWKIYNPERLS
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