NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315315_11823601

Scaffold Ga0315315_11823601


Overview

Basic Information
Taxon OID3300032073 Open in IMG/M
Scaffold IDGa0315315_11823601 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 40m 3416
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)516
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta → Guillardia theta CCMP2712(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.7468Long. (o)-122.0193Alt. (m)Depth (m)40
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010025Metagenome / Metatranscriptome309Y

Sequences

Protein IDFamilyRBSSequence
Ga0315315_118236011F010025N/ASAVDATSPRLAPCTVTDADPVPARLSRCSVLMLPSSTEYASDMLPPRSPAVIATRRVPCLPCPAMHLTDVSDSHSVPSHPVCPDRPSAVDATSPRLAPCTVTDADPVPARLSRRRVLMLPSSTEYAPDMLPPRSPAVIATRRVPCTPRPAMHLTDVSDSHSVPSHPVCPDR
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