NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308173_10246349

Scaffold Ga0308173_10246349


Overview

Basic Information
Taxon OID3300032074 Open in IMG/M
Scaffold IDGa0308173_10246349 Open in IMG/M
Source Dataset NameSoil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1511
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil → Leaf Surface Microbial Communities From Various Plants In Uc Gill Tract Community Farm, Albany, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.8864Long. (o)-122.2981Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001131Metagenome / Metatranscriptome768Y
F013213Metagenome / Metatranscriptome273Y

Sequences

Protein IDFamilyRBSSequence
Ga0308173_102463492F001131AGGAGVSGATLARPRSAPLIRPRDDGDKPLPPPLVWTFDGPFERCLADLEDSLRRGLVLIGDVSRVALLIDVSLPALQRRVRAGDPIQPAWGRFLERVADYGLPTFPRVRYLRKSGPLATLVVAYRS
Ga0308173_102463493F013213N/AMKSWVLHRVQGVAGRADLPSHDSVRAHEPDLVHDAGARGAAPAAGADALHAGADLGAYGPLIAAVRDELEHFVASHVRLHVVIAERDRFLLTAIGIRSPGGAAARELLQQFMHEFRPEQVKRYVAREVIGRLPNAAVLDLSQFAGLADLESAARPDDDDEYRELLAALRPTPALAPVRPYEVSVLGRWSEADLAAATPAGALRAPTTPLAG
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