NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310890_10846861

Scaffold Ga0310890_10846861


Overview

Basic Information
Taxon OID3300032075 Open in IMG/M
Scaffold IDGa0310890_10846861 Open in IMG/M
Source Dataset NameLab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)727
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil → Soil Microbial Communities From West Virginia University Organic Research Farm, Morgantown, Wv, United States

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6475Long. (o)-79.9369Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005598Metagenome / Metatranscriptome395Y
F008391Metagenome / Metatranscriptome334Y

Sequences

Protein IDFamilyRBSSequence
Ga0310890_108468612F005598AGGMSESDVSPQISSIEANYWWRQNTPEGVLLNKLMVLFIVIPVVLVLKRLYGISFFIFALMVPYGLLLRRLAVRAVLRHLQEHPEEREQFEQSGIISC
Ga0310890_108468613F008391N/AREVVDRFVPAEHGDKPFSRWKGKLINDPLATVIVNGRVVGIWEWNEGEEEVDLLLFDPSIPKSVEKAIQKRAGELASFIRANLGEVRLQGSDYGPHQMTGIHDLKAFWGKGAQVDVRV

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