NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0306924_10021916

Scaffold Ga0306924_10021916


Overview

Basic Information
Taxon OID3300032076 Open in IMG/M
Scaffold IDGa0306924_10021916 Open in IMG/M
Source Dataset NameLab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6796
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F086452Metagenome110N
F096165Metagenome105N

Sequences

Protein IDFamilyRBSSequence
Ga0306924_100219162F096165GAGGLQRITRGILLIFVVSTTTYARYSSAQSAAEKSSPCEALRSQKAKAYGFQLAQLNETQMEEKGKEINAFWKQVQADGPTGTACVRSMLEQEKSDHNFQFDAASMLYQTDHSPATLVLVRDSIAQADFRESDPGSYLALALELGQSGVDIRTLAAKFLRYPDAVVHVPEHALDLDSDTAALFLYGRMDPSFASKALIDQLQAPEPYVRAAAAHLLAEQMTEESFRALSQWTGFSKIEEDFRRNDIQAIMRYKAPNPGDFAHPKWNREQVLSVIEGLPHTRKEFEEVMAKKGEAFDQQVREKKPSEEELSRIVAESEPIYGIADRTSFIASAIATLKPEDFQAMREARRKSLFNVSDESLSEYLAFTQVMIGLLNRLDLYKEYRSH
Ga0306924_100219164F086452N/AVFPISEAPSFRRYHNSALVFVAFLAIAVRAVAADANSLEDATKLLAERVASIPNLHGPLRLEFAAGEGVVPSPGKAWQESFKKELEARHLSLTEDPAAPPLRIAVTATPTRWILAANARSADHEELRLVSVPRASIGPAAVPAAPLRIERQLVFESPERVLDASSLWNGSEAGVALLAYRNGELTALELDAAGAVKQSVPIVVADARPSRDPRGELSAQGANVDVLLPGKICSFGWASAGEVKCRSAKPVWRGAAVLAPPCDPAGWKLVSDGRDWTAPEVLQVVPVGSTREGSAAILSELPGPILNVNGEQNPASALVVT
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