Scaffold Ga0326721_10003046

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0326721_10003046

Scaffold Ga0326721_10003046

Overview

Basic Information
Taxon OID	3300032080 Open in IMG/M
Scaffold ID	Ga0326721_10003046 Open in IMG/M
Source Dataset Name	Soil microbial communities from Southern Great Plains, Lamont, Oklahoma, United States - SGP_1_2016
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	5521
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Microcoleaceae → Microcoleus → environmental samples → uncultured Microcoleus sp.	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Marine Airborne Microbial Communities From Various Locations

Source Dataset Sampling Location
Location Name	USA: Oklahoma
Coordinates	Lat. (^o)	36.36	Long. (^o)	-97.29	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001042	Metagenome / Metatranscriptome	794	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326721_100030462	F001042	AGGCGG	MTTSHLIGGNEASNVPKDFEADTDDKIVIDKLLVNKLTELLINSIYSVHVSRRSEIFLTSLDVHLAQDSISNKNDAARRDFTEKSSLLLESYQEDVPKLLGKAESCLGEAIDLINLIVSASEAEVNNG

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