NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0318518_10703345

Scaffold Ga0318518_10703345


Overview

Basic Information
Taxon OID3300032090 Open in IMG/M
Scaffold IDGa0318518_10703345 Open in IMG/M
Source Dataset NameTropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)514
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009023Metagenome / Metatranscriptome324Y
F033935Metagenome / Metatranscriptome176Y

Sequences

Protein IDFamilyRBSSequence
Ga0318518_107033451F009023AGGAGGMSRHGGRFAAGALVGAICLIGSLSALAQGAPPNFAPDRNIGWYAYNRLFISPASGAGPVRQDPGRPYVTNDEFRVTGRQPTSQLADINAPIL
Ga0318518_107033452F033935N/AKPGMQVKTVIHPMRDGTNGGQFMAITLPDGTLIGDVNAPASANAGGGP

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