NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0318577_10459239

Scaffold Ga0318577_10459239


Overview

Basic Information
Taxon OID3300032091 Open in IMG/M
Scaffold IDGa0318577_10459239 Open in IMG/M
Source Dataset NameTropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)608
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005719Metagenome / Metatranscriptome392Y
F007338Metagenome353Y

Sequences

Protein IDFamilyRBSSequence
Ga0318577_104592391F005719N/AMTIDLTRDEIWFLKPLRAAGEQGRIVSALASNAGLARLVEVQYVTKHLQSERKTLYIITDLGRQ
Ga0318577_104592392F007338GGAGGMAEPSDSNSLELRMAFHNAVSRFQDWTANVAEPRVKLRGKFCPISEVCEEVANLSNQLPEFILSVLCKETKADDDVLALKLDETYRGAGRHLLRLIDRRKDEIRRRRALKSQPLNDKSGR

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