NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0315905_10000956

Scaffold Ga0315905_10000956


Overview

Basic Information
Taxon OID3300032092 Open in IMG/M
Scaffold IDGa0315905_10000956 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA121
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)31419
Total Scaffold Genes51 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)39 (76.47%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.8268Long. (o)-83.1913Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F048854Metagenome147Y
F050233Metagenome / Metatranscriptome145Y
F057212Metagenome136Y
F074591Metagenome / Metatranscriptome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0315905_1000095613F074591AGGAMRNWNWTPRAKMIGLLLQAVAIIGIGWILFVGTWFALGGN
Ga0315905_100009562F057212GGAMTTIISTTGNNATTIVADRGITSDLMHPDMPKLVEQNNWLIGVAGNARVCDQLQYAIEYPKPPAELLKKDYQDWFGWIVTKIIPLISDTIKDAEMDAECLLVTHGKSFLISENLSVLSAQPYWAIGSGAELALGALAQSQYNPDWHKNHDLSARRAIEVASMHDPNTRGTIDVWHSHHTGKIIKG
Ga0315905_1000095620F048854AGGAGMDTAPKENKDNLIALRLNSEQMLAVRQWAHQHDTNISTVIRSAIELMTGAKQ
Ga0315905_1000095626F050233N/AMGIIEAGQYAAAITAILVLFGMAIKWAIVKPIKVYIDQATYPIHPESNGGRSLNDVAQTVARIESKLKDVDERLIAVENHVTKPATRSKKSTA
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.