NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315905_10002820

Scaffold Ga0315905_10002820


Overview

Basic Information
Taxon OID3300032092 Open in IMG/M
Scaffold IDGa0315905_10002820 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA121
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)18168
Total Scaffold Genes33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (21.21%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.8268Long. (o)-83.1913Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001775Metagenome / Metatranscriptome636Y
F019126Metagenome / Metatranscriptome231Y
F035632Metagenome / Metatranscriptome171Y
F095001Metagenome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0315905_1000282015F001775N/AMKELLDDERIKIATLSFLAGLILAFIIYPKPEQETIYKFETVTKTDTLILEVKDTVYIPKNKIKTQVLRDTILINNKPNIKAFSTTTPFEYGNTYVSGEVLGEVLKMSVTNDFKIPTVTNTITNTETKNIVQKPKGFYLGVGVNSLLQPSASASYLDNKYLFQYQYQPLQRIHQIGVAKKLF
Ga0315905_1000282020F035632N/AMEKFLSIPVTNEQRQLLSATGIVLIVQASTTTVTVHYKSSTGTDVVTITHAAAGAGDESMRDAIQAAVISALGTSWTYVAFEVNNLPFAVSGIAIA
Ga0315905_1000282025F095001AGCAGMRGIYGGTFSQTKEFKDDKHLDNWLAWMDKNQDRVKVIGTTIL
Ga0315905_100028206F019126N/AMAQKVTKTNAELLELVRALNVTSTEKGSKAEAKIKKIVEKIKPLFDQYNEKREDIRLDHAHTESNGVLELNEKGEYKFTKDGIKAMSKDMKSLLDETFEFYQFTFSSEGIENFKFLAGWVESIEAEQSVEEVE
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