Scaffold Ga0315905_10003459

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0315905_10003459

Scaffold Ga0315905_10003459

Overview

Basic Information
Taxon OID	3300032092 Open in IMG/M
Scaffold ID	Ga0315905_10003459 Open in IMG/M
Source Dataset Name	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA121
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	16304
Total Scaffold Genes	31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (25.81%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location Name	USA: Lake Erie, Ohio
Coordinates	Lat. (^o)	41.8268	Long. (^o)	-83.1913	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F052371	Metagenome	142	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315905_1000345916	F052371	GAG	MTTSPRLTDSEQLDLERFKLARSSEKLNTISIALVVDELIRGMHKLGIKGDKIPNKEELSVMYKSIVEEYPNIKFGELSLAFDLASKGKLDMEAETYQNFSVLYLHRLLRSFARYGMQKLNEIKPVENINWQPRFITDDEKIETAFDCFKKFRIWDSIVFGVDVFHILHKQGKIIVEVDDTYDKVLKAMNEKLFEGSRQDKIDIRNKMKDDDYMEHQCYRMAVADYFDKLLKAQ

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