NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315905_10014310

Scaffold Ga0315905_10014310


Overview

Basic Information
Taxon OID3300032092 Open in IMG/M
Scaffold IDGa0315905_10014310 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA121
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8017
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.8268Long. (o)-83.1913Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029107Metagenome / Metatranscriptome189Y
F062758Metagenome130Y

Sequences

Protein IDFamilyRBSSequence
Ga0315905_100143102F062758AGGMADILLSNEDLTVFGGPESISLDLDIGPQGDRGSIVIGVLGDPRDSNVEATIVQDTQALDIAIDYQPASPFFKTMFQLVSTGGGLQWTPLISLKANSYSSIKQVTASNGKLVIPPINVTEIYDLSENEVTSANFKVNYSISAPDTAGPLATTLVVKDLVTSQGFLALPLEIKGVEYDGTTWGPITGPKNVHLFITVV
Ga0315905_100143106F029107N/AMTTHSNPQLSNTEATRLTPEGMHSGMDITIQNLSDTAYVYLGGEGVNQEDFGYRLAPGAAWSVELPGLNSLYAIADTNGTYIAVLKTGLE
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