NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315905_10021690

Scaffold Ga0315905_10021690


Overview

Basic Information
Taxon OID3300032092 Open in IMG/M
Scaffold IDGa0315905_10021690 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA121
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6506
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (89.47%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.8268Long. (o)-83.1913Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000447Metagenome / Metatranscriptome1128Y
F000684Metagenome / Metatranscriptome938Y
F004840Metagenome / Metatranscriptome421Y
F007263Metagenome / Metatranscriptome354Y
F039631Metagenome / Metatranscriptome163Y

Sequences

Protein IDFamilyRBSSequence
Ga0315905_100216901F000684AGGMTLSGYTYQIGDLFTTSKTGVTGRIKNFTPINSKLTRVSLQLANGAHRFAMV
Ga0315905_1002169016F039631AGGMITLDKNYIKSSKYGQYNLEQRIIIAAEKVANGELVSFRGASADTYNKVQALANRIKLEREFPQCPCGECD
Ga0315905_100216906F004840AGGAGMEYEYVITSAYDSNEPHWTQRYENEFGAWESFFRFTDWGMANEYRTVNLYTPTGKCYTKLFYRNGEVQVKA
Ga0315905_100216908F000447GAGGMGYIEFFRIDEEGAGWVDLSEATPEEILDLEIGLFQEGAL
Ga0315905_100216909F007263AGGMALNIIDKTDFYEIADEQHFCCDESQFKYYCEKHLEFMGCYFCTFDYDKDCEEQH
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