NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315905_10032833

Scaffold Ga0315905_10032833


Overview

Basic Information
Taxon OID3300032092 Open in IMG/M
Scaffold IDGa0315905_10032833 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA121
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5268
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.8268Long. (o)-83.1913Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007752Metagenome345Y
F074878Metagenome / Metatranscriptome119N
F076074Metagenome118N

Sequences

Protein IDFamilyRBSSequence
Ga0315905_1003283311F074878N/AMSYTIAMNTTDIVIVKFRSRSPRLLFSAYYNGVLLASGSNAQDLGEDYARKYGTEWVLQDGNKFYTQGGVK
Ga0315905_100328333F076074N/AMNEYNGWKNETTWTINILFMETIEQLVKDGYDVDQVATHIYRKLDVHNMNWYGSQVFTSAWKQIDWWTLYDRAKENTKQTA
Ga0315905_100328337F007752GGAMQLWEVKGFQSSAVKVLFVGKTANGQDCIGCAWDAYTTYIFAYEGIIDTFMYYLETFKSVGQAMSATKLRNGLQDETYFRPYWSTMPSKVHNQLYRFERYEMIRHYPNIVVHQNLFFDTPENAIKNLISSGDLEAERSHLVDCMTRRVG
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