Scaffold Ga0315905_10155741

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0315905_10155741

Scaffold Ga0315905_10155741

Overview

Basic Information
Taxon OID	3300032092 Open in IMG/M
Scaffold ID	Ga0315905_10155741 Open in IMG/M
Source Dataset Name	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA121
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2274
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → unclassified Verrucomicrobiales → Verrucomicrobiales bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location Name	USA: Lake Erie, Ohio
Coordinates	Lat. (^o)	41.8268	Long. (^o)	-83.1913	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F079975	Metagenome / Metatranscriptome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315905_101557413	F079975	AGAAG	VEEKRLIRDQANKSNYKSYHRRCGHANMKSLITFKRHGKMTASRLDPKFLRNYRKDCPIFVAMEMRRKSLPKGSNSAHELDNLVPWEEVFTDSSGKFRRKSKQGNNYLTVFVCAKTGDKIAIPHVKRKHFPLVYFEFSKRIGRHPKVMYSDLASEITSSMFERYLLVKGVNHVNVPRGEHHSIGVAEKAIQDLSNMMRCMLADSNVPGIYWDFVIEHAALVNSMIKQSISDKTKTKLFGM

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