NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315902_10056172

Scaffold Ga0315902_10056172


Overview

Basic Information
Taxon OID3300032093 Open in IMG/M
Scaffold IDGa0315902_10056172 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA117
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4495
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → unclassified bacterial viruses → Synechococcus phage S-EIVl(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001190Metagenome / Metatranscriptome753Y
F043888Metagenome155Y

Sequences

Protein IDFamilyRBSSequence
Ga0315902_100561726F043888GAGGMGGGGTRVEYKSPEIPRDNTFAEYLKYQQEREARAEQRADTEKAEQKAAAEARKSSAAAAYSGMRSGIESQLRQGLISYNDATSQLRDYASKYDLSPPEQDVAGLTDIYTKELLPGRRATGITSAYKEILGREAKEEEKTEALERFNQGYYSTVQDLRDSLAKGQEYQDKFNNSYLDNYYDTMYGKQATDAAGKKTGQRTFKFDKNLLPTYADATKARAGVQLPNFADTFTGTPSEIEENLQNVRDTRKYLYSAGLTNLQGEIDKETQKLKNEGSREVAKINSFGSVASNLVSGFWS
Ga0315902_100561728F001190AGGMSATPTGQPTTDDYFDINKFEQLLQRLEGSKGRQQRQKSLEGRRDIYSQGLASMMSN
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