NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315902_11012794

Scaffold Ga0315902_11012794


Overview

Basic Information
Taxon OID3300032093 Open in IMG/M
Scaffold IDGa0315902_11012794 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA117
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)623
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036203Metagenome170Y
F043899Metagenome155Y

Sequences

Protein IDFamilyRBSSequence
Ga0315902_110127941F043899GGCGGMNLDDALDNLLKTSEMNSVQKTEPRQRQAEWLPGVTWQGEEGIVTTQPMEGDNAPDWSGVLRMWGLDPEHFQVVEPVLFNVWGDTLGILNRQWK
Ga0315902_110127942F036203N/ASKAQPAHGVSDVQGVNLKINQADLFKELDFLVGKGRQQDGCSVGQMVNKLDKPLRDKLNEIFCNTKVDSASLKKVLDSYGLAVSSSDVLRRHRRRLIGKDGCKCPIENSAVPLK
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Institute for Fundamental Biomedical Research
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